There was a few issues. I think, as Paul suggested, there was some corruption. So I uninstalled Notes and renamed the legacy jvm directory to oldjvm and reinstalled. Then I got a few permission errors. Fixed them by adding in an entry in the java.policy file for this NSF. The app was using DB2 as well so putting the db2 jar files into jvm/lib/ext solved the remaining pieces.
Thanks to the responders.
Mike