no problem here, I even managed to connect to Git repo thanks to http://www.openntf.org/internal/home.nsf/project.xsp?action=openDocument&documentId=D1668ED7018AA0858625786300624B6F
I installed the Egit Plugin and restarted Notes. Then right-click on the project in Designer, select Team Development -> Set up source control for this application
And then in Navigator (Window - Show Eclipse View - Navigator) right click on newly created on-disk project , Team -> Commit