Just had this discussion a while ago on linkedin in the group "Lotus Notes/Domino Technologies (7.000+ members)"
The preferred way is use the DominoTeam Mailbox from openntf.
Other options are:
http://www-10.lotus.com/ldd/ddwiki.nsf/dx/Sending_an_email_with_a_custom_%E2%80%9Csender%E2%80%9D_via_MIME
Or Steve's option:
• As part of an automatic database creation system for helpdesk I wrote for one customer it would request basic information then go away and create all their standard ACL groups, the database, replicas on different servers etc. and send the relevant users details of it and the groups they could administer. When needed for replying to a mail-in we just set the mail file owner as part of this LotusScript creation code, then sending a mail from within that database works in the same way as sending from someone else's mail file, i.e. From (real name) and Reply-To (the database) show.
Dim calprofile As notesdocument
Set calprofile=dbNew.GetProfileDocument( "calendarprofile")
calprofile.Owner=uidoc.fieldgettext("mailindbname")
Call calprofile.computewithform(False,False)
Call calprofile.save(False,False)
Set calprofile=Nothing
Maybe this helps?