I'm not sure you'll get an answer to whether features will be implemented in future releases.
It could be somewhat simple to implement (actually less code than this posting), though I'm unsure how you'd like to actually control coloring information on the email. To be sure, there's nothing in Notes that'd prevent an intermediate developer from making this change.
Are the replies also marked with a color when they come in, or when they're sent? That is, is there any inheritance or incoming-email operation that would mark other replies with the same color?
I'm looking at an older template, but it's essentially a formula in a text field on the profile, "ColorProfile": "$Sender1".
I'd also have to assume you're working with the Lotus Notes client, not iNotes. Is this true?
It appears to be possible to add a separate design template on top of the existing template. That would keep the standard template "standard", but allow you to apply more design elements to support color customization. It comes with two significant downsides:
1- If you left the mailbox standard, changes in the mailbox preferences would override any change you injected independently into this profile.
2- Your users need to be able to tag emails for color. If you need the color action available as a view button, instead of the Action menu, then design changes would need to affect the views themselves (so -- customizing the mail template). However if you can tolerate the user selecting say, "Actions..Color ..." from the Lotus Notes menu, that'd keep the design elements separate.
3- We're only talking about the Lotus Notes client users receiving this enhancement.
If you could tolerate 1 - 3, there seems to be a way to design in this change without actually changing the mail template -- just adding a separate template in addition to the standard.
(In interests of disclosure, I'm not offering to do this for money. But I'd be happy to point out how to proceed.)